Training Service Catalogue

Regular Training Offerings

Workshop	Essential Skills	Submit Interest	Next Session
Introduction to NeSI https://youtube.com/playlist?list=PLvbRzoDQPkuFsIzAWaIiYgs-kConq-Hjw&si=...	None	Submit Interest	Available on request
Introduction to High Performance Computing on NeSI https://nesi.github.io/hpc-intro/ Running Deep Learning on NeSI https://github.com/nesi/dl_demos	Bash, Slurm/NeSI	Submit Interest	TBC
Machine Learning 101 https://github.com/nesi/sklearn_tutorial	Bash, Python	Submit Interest	TBC
Machine Learning 102 https://github.com/nesi/ml102_workshop	Bash, Python, Slurm/NeSI	Submit Interest	TBC
Introduction to R https://genomicsaotearoa.github.io/Introduction-to-R/	R	Submit Interest	TBC
RNA Sequencing https://genomicsaotearoa.github.io/RNA-seq-workshop/	Bash, R	Submit Interest	TBC
Bash for Bioinformatics https://genomicsaotearoa.github.io/shell-for-bioinformatics/	Bash	Submit Interest	TBC
Intermediate Shell https://genomicsaotearoa.github.io/shell-for-bioinformatics/	Bash	Submit Interest	TBC
Genomics Data Carpentry https://datacarpentry.org/genomics-workshop/	Bash, R	Submit Interest	TBC
Introduction to Command Line https://swcarpentry.github.io/shell-novice/ Introduction to Nextflow https://genomicsaotearoa.github.io/introduction-to-nextflow/ Introduction to Bash Scripting and HPC Scheduler https://genomicsaotearoa.github.io/Workshop-Bash_Scripting_And_HPC_Job_S...	--	Submit Interest	TBC

Other (more specific) training offerings *

Workshop	Essential Skills	Submit Request
Python for Ecologists https://datacarpentry.org/python-ecology-lesson/	Python	Submit Request
Genotype Imputation https://genomicsaotearoa.github.io/Imputation-workshop/	Bash, R, Slurm/NeSI	Submit Request
Long-Read Assembly https://genomicsaotearoa.github.io/long-read-assembly/	Bash, Slurm/NeSI	Submit Request
Pangenome Graphs https://genomicsaotearoa.github.io/Pangenome-Graphs-Workshop/	Bash, Slurm/NeSI	Submit Request
Outlier Analysis https://genomicsaotearoa.github.io/Outlier_Analysis_Workshop/	Bash, R	Submit Request
Single Cell RNA-seq https://genomicsaotearoa.github.io/scRNA-seq-data-analysis/	Bash, R	Submit Request
Python for Atmosphere and Ocean Scientists https://carpentries-lab.github.io/python-aos-lesson/	Python	Submit Request
Introduction to Snakemake https://nesi.github.io/snakemake_workshop/	Bash, Slurm/NeSI	Submit Request
Introduction to Containers on NeSI https://nesi.github.io/ernz20-containers/	Bash, Slurm/NeSI	Submit Request
Intermediate R https://genomicsaotearoa.github.io/Intermediate-R/	R	Submit Request

*We encourage you to submit a request for any workshops included in our specific offerings and beyond by emailing us. However, please note that our ability to accommodate your request may depend on our team's workload and availability. In case of any queries, reach out to us at training@nesi.org.nz

You can find more information on bioinformatics workshops we offer through our partnership with Genomics Aotearoa here.

Contact:

Nisha Ghatak

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Training

Attribution:

Building computational capability and sharing training expertise.

Training Service Catalogue

Regular Training Offerings

Other (more specific) training offerings *